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6 April 2009:
I successfully defended my thesis!

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Papers

Niemi, J. and West, M.
Adaptive mixture modelling Metropolis methods for Bayesian analysis of non-linear state-space models. Abstract
(submitted)

David Banks, Gauri Datta, Alan Karr, James Lynch, Jarad Niemi, and Francisco Vera.
Bayesian CAR models for syndromic surveillance on multiple data streams: theory and practice.
(submitted)

Niemi., G. and Niemi, J.
Old and new applications of multivariate statistics to problems in QSAR. Abstract
(submitted)

Porter, M., Niemi, J., and Reich, B.
Mixture Likelihood Ratio Scan Statistic for Disease Outbreak Detection. Abstract
(submitted)

Wang, Q., Niemi, J., Tan, C., You, L., and West, M.
Image segmentation and dynamic lineage analysis in single-cell fluorescent microscopy. Abstract
(to appear) Synthetic Biology
software

Niemi, J., Smith, M., and Banks, D.
Test Power for Drug Abuse Surveillance. Biosurveillance and Biosecurity, Proceedings of BioSecure 2008, Lecture Notes in Computer Science, eds. Daniel Zeng et al. pp. 131-142

Niemi, J. B., Carlin, B. P., and Alexander, J. M.
Contrarian strategies for NCAA tournament pools: a cure for March madness?
Chance, 21(1): 39-46, 2008 Paper

C. Tan, H. Song, J. Niemi, and L. You.
A synthetic biology challenge: making cells compute.
Molecular BioSystems, 3:343-353, 2007 Paper

Simmons, M. J., Niemi, J. B., Ryzek, D. , Lamour, C., Goodman, J. W., Kraszkiewicz, W. , and Wolff, R.
Cytotype regulation by telomeric P elements in Drosophila melanogaster: interactions with P elements from M' strains.
Genetics, 176: 1957-1966, August 2007. Paper

Haley, K. J., Stuart, J. R., Raymond, J. D., Niemi, J. B., and Simmons, M. J.
Impairment of cytotype regulation of P-element activity in Drosophila melanogaster by mutations in the Su(var)205 gene.
Genetics, 171: 583-595, October 2005. Paper

Niemi, J. B.
Identifying and evaluating contrarian strategies for NCAA tournament pools.
Master's thesis, University of Minnesota, 2005. Paper

Simmons, M. J., Raymond, J. D., Niemi, J. B., Stuart, J. R., and Merriman, P. J.
The P cytotype in Drosophila melanogaster: a maternally transmitted regulatory state of the germ line associated with telomeric P elements.
Genetics, 166: 248-254, January 2004. Paper

Niemi, J. B., Raymond, J. D., Patrek, R., and Simmons, M. J.
Establishment and maintenance of the P cytotype associated with telomeric P elements in Drosophila melanogaster.
Genetcs, 166: 255-264, January 2004. Paper

Simmons, M. J., Haley, K. J., Grimes, C. D., Raymond, J. D., and Niemi, J. B.
A hobo transgene that encodes the P-element transposase in Drosophila melanogaster: autoregulation and cytotype control of transposase activity.
Genetics, 161: 195-204, May 2002. Paper

Posters

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Systems Biology Retreat 2009 "Nonlinear Dynamic Models for Single-Cell Time-Lapse Microscopy"

SAMSI Sequential Monte Carlo Workshop, 8 September 2008

SeqMC Workshop poster "Adaptive mixture filtering: an alternative to particle filtering?"

SAMSI Sequential Monte Carlo Workshop, 8 September 2008

Valencia 8 poster "Bayesian parameter estimation for systems biological models of dynamic cellular networks"

Biosystems Modeling Workshop, 5 March 2007

Annual Duke Systems Biology Symposium, 14 September 2006

8th Valencia International Meeting on Bayesian Statistics, 5 June 2006

Presentations

Defense
Prelim