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23 Sep 2008:
My paper discussing drug abuse surveillance techniques was accepted for publication in Lecture Notes in Computer Science as part of BioSecure 2008.

Papers

Niemi, J. and West, M.
Adaptive mixture modelling Metropolis methods for Bayesian analysis of non-linear state-space models. Abstract
(submitted)

Niemi., G. and Niemi, J.
Old and new applications of multivariate statistics to problems in QSAR.
(submitted)

Porter, M., Niemi, J., and Reich, B.
Mixture Likelihood Ratio Scan Statistic for Disease Outbreak Detection.
(submitted)

Niemi, J., Smith, M., and Banks, D.
Test Power for Drug Abuse Surveillance.
(to appear) Lecture Notes in Computer Science

Wang, Q., Niemi, J., Tan, C., You, L., and West, M.
Image segmentation and dynamic lineage analysis in single-cell fluorescent microscopy.
(submitted)

Niemi, J. B., Carlin, B. P., and Alexander, J. M.
Contrarian strategies for NCAA tournament pools: a cure for March madness?
Chance, 21(1): 39-46, 2008

Simmons, M. J., Niemi, J. B., Ryzek, D. , Lamour, C., Goodman, J. W., Kraszkiewicz, W. , and Wolff, R.
Cytotype regulation by telomeric P elements in Drosophila melanogaster: interactions with P elements from M' strains.
Genetics, 176: 1957-1966, August 2007.

Haley, K. J., Stuart, J. R., Raymond, J. D., Niemi, J. B., and Simmons, M. J.
Impairment of cytotype regulation of P-element activity in Drosophila melanogaster by mutations in the Su(var)205 gene.
Genetics, 171: 583-595, October 2005.

Niemi, J. B.
Identifying and evaluating contrarian strategies for NCAA tournament pools.
Master's thesis, University of Minnesota, 2005.
URL http://www.stat.duke.edu/~jbn9/papers/nca.pdf.

Simmons, M. J., Raymond, J. D., Niemi, J. B., Stuart, J. R., and Merriman, P. J.
The P cytotype in Drosophila melanogaster: a maternally transmitted regulatory state of the germ line associated with telomeric P elements.
Genetics, 166: 248-254, January 2004.

Niemi, J. B., Raymond, J. D., Patrek, R., and Simmons, M. J.
Establishment and maintenance of the P cytotype associated with telomeric P elements in Drosophila melanogaster.
Genetcs, 166: 255-264, January 2004.

Simmons, M. J., Haley, K. J., Grimes, C. D., Raymond, J. D., and Niemi, J. B.
A hobo transgene that encodes the P-element transposase in Drosophila melanogaster: autoregulation and cytotype control of transposase activity.
Genetics, 161: 195-204, May 2002.

Posters

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SeqMC Workshop poster "Adaptive mixture filtering: an alternative to particle filtering?"

SAMSI Sequential Monte Carlo Workshop, 8 September 2008

Valencia 8 poster "Bayesian parameter estimation for systems biological models of dynamic cellular networks"

Biosystems Modeling Workshop, 5 March 2007

Annual Duke Systems Biology Symposium, 14 September 2006

8th Valencia International Meeting on Bayesian Statistics, 5 June 2006

Presentations

Prelim